ABOUT

Genomics for australian plants

Australia’s unique flora is the result of millions of years of isolated evolution prior to collision with the Asian continent. There are an astounding 24,000 species of native vascular plants, many of which are found nowhere else in the world.

Australian native plants are vital for multiple sectors, including agriculture, forestry, fisheries, aquaculture, and tourism. They hold significant cultural importance for Indigenous communities, supporting their history, innovation, culture, spirituality, and economics for millennia. Genomic characterisation aids in managing and conserving native species, which have faced disturbances since European settlement.

Genomic approaches reveal key insights for plant evolution and conservation, aiding management decisions. Despite limited characterisation of plant genomes, genomic data offers vast potential for identifying traits and informing various applications, including biofuel production, drug development, and crop breeding.

Since its outset in 2018, the Bioplatforms Genomics for Australian Plants Initiative has sequenced and assembled representative plant genomes to enhance herbaria and botanic garden collections nationwide with genomic data, fostering long-term conservation and understanding of Australia’s unique flora. You can find out more on the Genomics for Australian Plants website.

OBJECTIVES

Through this program of research, the creation of referential genomic data resources of Australian native plants will:

    • Sequence and assemble Australian plant genomes to enhance conservation, utilisation, and understanding of plant diversity.
    • Build genomic capacity across Australian Botanic Gardens and Herbaria for collaborative data management and application.
    • Develop tools to use genetic data for identifying and classifying biodiversity, aiding conservation management and decision-making.

DATA

For further information and to view and access initiative data, please go to the Bioplatforms Australia Data Portal.

PROJECTS

Scientific nameCommon nameData StrategyProject Lead
Acacia pycnanthaGolden WattleReference genome (PromethION, 10X, Illumina [RNA])Daniel Murphy
Archirhodomyrtus beckleriRose myrtleReference genome (PromethION)David Cantrill
Austrobaileya scandensAustrobaileyaReference genome (PromethION, PacBio-HiFi)Darren Crayn
Bellendena montanaMountain RocketReference genome (PacBio-HiFi)David Cantrill
Berberidopsis beckleriMontane tape vineReference genome (PacBio-HiFi)Jeremy Bruhl
Callicoma serratifoliaBlack WattleReference genome (PromethION)David Cantrill
Dampiera purpureaMountain or Purple dampieraReference genome (PacBio-HiFi)David Cantrill
Dendrocnide excelsaGiant Stinging TreeReference genome (PacBio-HiFi)David Cantrill
Denhamia bilocularisOrangebarkReference genome (PacBio-HiFi)David Cantrill
Doryanthes excelsaGymea lilyReference genome (PromethION, PacBio-HiFi)David Cantrill
Elaeocarpus reticulatusBlueberry ash, Fairy petticoats, KodaReference genome (PacBio-HiFi)David Cantrill
Eremophila drummondiiDrummond’s EremophilaReference genome (PacBio-HiFi, Illumina)Rachael Fowler
Eucryphia lucidaLeatherwoodReference genome (PromethION)David Cantrill
Eupomatia laurinaBolwarra, copper laurel, native guavaReference genome (PacBio-HiFi)David Cantrill
Flindersia xanthoxylaYellow-wood, Long jackReference genome (PacBio-HiFi)David Cantrill
Gastrolobium racemosumNet-leaved poisonReference genome (PromethION)David Cantrill
Gymnostoma australianumDaintree pine, Daintree oakReference genome (PacBio-HiFi)David Cantrill
Gymnostoma australianumDaintree pine or Daintree oakReference genome (PacBio-HiFi)David Cantrill
Hedycarya angustifoliaAustral mulberryReference genome (PacBio-HiFi)David Cantrill
Hibbertia scandensClimbing guinea flowerReference genome (PromethION, Illumina)Michelle Waycott
Isopogon anethifoliusNarrow-leaf drumsticksReference genome (PromethION)David Cantrill
Kingia australisKingia, BullanockReference genome (PacBio-HiFi)David Cantrill
Lepidosperma gladiatumCoast sword-sedgeReference genome (PacBio-HiFi)David Cantrill
Leucochrysum albicansHoary SunrayReference genome (PacBio-HiFi)Alexander Schmidt-Lebuhn
Nothofagus cunninghamiiTasmanian myrtleReference genome (PacBio-HiFi)David Cantrill
Pelargonium australeNative storksbill, austral storksbill)Reference genome (PacBio-HiFi)Michael Roach
Phebalium stellatumPhebalium stellatumReference genome (PacBio-HiFi, PromethION [RNA], Hi-C)Rose Andrew, Ash Jones
Phyllanthus gunniiScrubby spurgeReference genome (PacBio-HiFi)David Cantrill
Pultenaea daphnoidesLarge-leaf bush-peaReference genome (PacBio-HiFi)David Cantrill
Quintinia fawkneriClimbing quintiniaReference genome (PromethION)David Cantrill
Roepera similisWhite twinleafReference genome (PacBio-HiFi)David Cantrill
Tasmannia lanceolataMountain pepper, Tasmanian pepperberryReference genome (PacBio-HiFi)Mathew Lewsey, Alexandre Fournier-Level
Telopea speciosissimaNSW WaratahReference genome (PromethION, 10X, Hi-C)Jason Bragg
Thelymitra variegataQueen of Sheba orchidReference genome (Pacbio-HiFi)Katharina Nargar
Wahlenbergia ceraceaWaxy bluebellReference genome (PacBio-HiFi, Hi-C)Jemimah Hamilton, Ash Jones
Xanthorrhoea johnsoniiJohnson’s grass treeReference genome (PacBio-HiFi, PromethION [DNA,RNA], Hi-C)Todd McLay, Ash Jones
Acacia and related mimosoid legume phylogenomicsPhylogenomics (Bait capture - Illumina)Dan Murphy
Alismatales (Alismatids)Phylogenomics (Bait capture - Illumina)Michelle Waycott
BoronieaeAustralian RutaceaePhylogenomics (Bait capture - Illumina)Harvey Orel
DroseraSundewsPhylogenomics (Bait capture - Illumina)Michelle Waycott
EricaceaeEpacrids, southern heathsPhylogenomics (Bait capture - Illumina)Darren Crayn
Fabaceae tribe MirbelieaeBush peasPhylogenomics (Bait capture - Illumina)James Clugston
HibbertiaGuinea flowersPhylogenomics (Bait capture - Illumina)Michelle Waycott
Lasiopetaleae (Malvaceae)Phylogenomics (Bait capture - Illumina)Kelly Shepherd
Myrtaceae tribe ChameulaucieaeWaxflowerPhylogenomics (Bait capture - Illumina)Michelle Waycott
PersooniaGeebung, SnottygobblePhylogenomics (Bait capture - Illumina)Gareth Holmes
Santalaceae (Viscaceae & Amphorogynaceae)MistletoesPhylogenomics (Bait capture - Illumina)Benjamin Anderson
StylidiaceaeTriggerplant familyPhylogenomics (Bait capture - Illumina)Juliet Wege
Tecticornia & SalicorniaSamphiresPhylogenomics (Bait capture - Illumina)Kelly Shepherd
TeucriumGermanderPhylogenomics (Bait capture - Illumina)Trevor Wilson
TyphoniumArum lilies, Dead horse liliesPhylogenomics (Bait capture - Illumina)Matthew Barrett
XanthorrhoeGrass trees, yacca, balgaPhylogenomics (Bait capture - Illumina)Todd McLay
Allocasuarina section CylindropitysShe-oaksConservation genomics (ddRAD)Marlien van der Merwe
Cassia species in QueenslandConservation genomics (ddRAD)Laura Simmons
Geleznowia verrucosa species complexYellow bellsConservation genomics (ddRAD)Kelly Shepherd
Gompholobium species in QueenslandConservation genomics (ddRAD)Laura Simmons
Isopogon buxifolius complexConservation genomics (ddRAD)Rachel Binks
Lepidosperma fimbriatumConservation genomics (ddRAD)Russell Barrett
Lepidosperma lateraleConservation genomics (ddRAD)Jeremy Bruhl
Olearia ramulosaTwiggy Daisy BushConservation genomics (ddRAD)Andre Messina
Paracaleana gracilicordata / P. granitica complex (flying duck orchids)Conservation genomics (ddRAD)Katharina Nargar
Samadera bidwilliiConservation genomics (ddRAD)Laura Simmons
Synaphea stenoloba complexConservation genomics (ddRAD)Rachel Binks
Wurmbea dioica subsp. alba complexConservation genomics (ddRAD)Rachel Binks
Zieria speciesConservation genomics (ddRAD)Mike Bayly

PARTNERS

hide

advisory committee members

CONTACT US

Program Manager

Mabel Lum – Bioplatforms Australia
mlum@bioplatforms.com

Science Lead

David Cantrill – Royal Botanic Gardens of Victoria
David.Cantrill@rbg.vic.gov.au

General Manager – Science Programs

Sarah Richmond – Bioplatforms Australia
srichmond@bioplatforms.com